Apartments in San Juan Island for Rent

  • Plan, book, stay with confidence

  • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Check prices for these dates

Next weekend
In two weeks
In one month
In two months

Compare 48 Apartments in San Juan Island with updated reviews, rates, and availability.

Charming 2-bedroom bungalow with hot tub in Deer Harbor. Walk to the marina!

Charming 2-bedroom bungalow with hot tub in Deer Harbor. Walk to the marina!

Sunny Island Cliff Side Views

9.8 out of 10, Exceptional, (38)
"Our stay at Shyna and Michael’s beautiful cliff-side home was perfect. The house is clean and comfortable with everything well appointed. We spent a lovely late afternoon/ evening taking in the panorama and gorgeous sunset. Our host prepared a special Indian dinner - really authentic and scrumptious. "
The price is ¥26,632
¥46,883 total
includes taxes & fees
Jan 23 - Jan 24
Sunny Island Cliff Side Views

Experience Orcas Island charm in our cozy 1-bedroom loft guest suite

9.8 out of 10, Exceptional, (19)
"My wife and I were looking for a place to get away from the hustle. Orcas Island and particularly the Madrona Suite were just what we were looking for. The studio is spacious for two and very comfortable. The view out the large picture window is wonderful. There is wifi but no TV, which was fine with us. We brought a laptop and did stream a show or two with no issue. The hosts are very nice people. They provided us with information on the islands and left us to our own devices. If we hadn't...
The price is ¥24,064
¥43,379 total
includes taxes & fees
Jan 24 - Jan 25
Experience Orcas Island charm in our cozy 1-bedroom loft guest suite

Enjoy stunning views from the private guest suite - peaceful waterfront retreat!

10.0 out of 10, Exceptional, (7)
"Enjoyed the view, amenities and family time. Stayed to celebrate a birthday. Will plan to return in the future. "
The price is ¥23,288
¥43,519 total
includes taxes & fees
Jan 29 - Jan 30
Enjoy stunning views from the private guest suite - peaceful waterfront retreat!

View * W/D * Downtown * Harbor * R & R!

2.0 star property
The price is ¥16,138
¥38,626 total
includes taxes & fees
Jan 23 - Jan 24
View * W/D * Downtown * Harbor * R & R!

Stunning guest home on the water with gorgeous views, bright interior, & WiFi

10.0 out of 10, Exceptional, (63)
"Great location, great view!"
The price is ¥23,828
¥58,801 total
includes taxes & fees
Jan 23 - Jan 24
Stunning guest home on the water with gorgeous views, bright interior, & WiFi

Studio Unit with Views of Hales Passage and Mt Baker

10.0 out of 10, Exceptional, (91)
"Excellent place, location and stay. I will recommend to my friends. Thank you. Try the duck and Oregon Pino at the Beach Cafe. Pick some apples at the park. "
Studio Unit with Views of Hales Passage and Mt Baker

Dog-friendly studio w/ kitchenette, WiFi, yard & fire pit

9.2 out of 10, Wonderful, (65)
"Large and wondefully interesting backyard for my dog to run free (she loved it so much) and wonderful studio that was perfect for our needs. "
The price is ¥12,575
¥35,268 total
includes taxes & fees
Jan 28 - Jan 29
Dog-friendly studio w/ kitchenette, WiFi, yard & fire pit

In-Law suite with mountain views, patio, jetted tub, & full kitchen

8.0 out of 10, Very Good, (6)
"Very basic amenities. No tv or comfortable place to sit. Very limited kitchen. "
In-Law suite with mountain views, patio, jetted tub, & full kitchen

Spectacular Views!! 1.5 miles from Eastsound

10.0 out of 10, Exceptional, (89)
"The weather did not cooperate. Beautiful perch. Lighting a bit dim. Basically a large room w a loft and a great deck. With rain we were confined and could not fully appreciate an amazing view. It does sleep 3 but one adult needs to be up and 8 ft latter w minimal privacy. Host was helpful."
Spectacular Views!! 1.5 miles from Eastsound

Sea View Inn Summary:

9.2 out of 10, Wonderful, (45)
"Lovely property with a world class view"
Sea View Inn Summary:

Home Away From Home…

8.8 out of 10, Excellent, (9)
"We really enjoyed this spot! Beautiful view of the ocean and very conveniently located on the island. Close enough to town to be convenient but far enough away be quiet and relaxing. The owner did lots of thoughtful and convenient things to make our stay wonderful! We will be staying here again at some point and definitely recommending it to friends!"
The price is ¥38,813
¥67,814 total
includes taxes & fees
Jan 29 - Jan 30
Home Away From Home…

Anacortes Condo - Walk to Town, Marina, + Bay!

9.6 out of 10, Exceptional, (10)
"When reading reviews of properties I can be skeptical about the ratings. But this property is a gem. From the quaint shared outdoor space, to the clean expansive unit, to the location to the San Juan Island area it was a gem. I highly recommend staying at this property whenever in Anacortes Wa."
Anacortes Condo - Walk to Town, Marina, + Bay!

Airy Home Near Anacortes w/ San Juan de Fuca Views

10.0 out of 10, Exceptional, (65)
"This is a very comfortable and clean place. Nicely decorated, quality kitchen pots and tools, and lots of nice extra touches. The neighborhood and view are wonderful. The host is very responsive and helpful."
Airy Home Near Anacortes w/ San Juan de Fuca Views

Dog-Friendly Anacortes Retreat w/ Shared Hot Tub!

Dog-Friendly Anacortes Retreat w/ Shared Hot Tub!

Studio with a View!!

9.6 out of 10, Exceptional, (53)
"This was a beautiful property for our Thanksgiving getaway. The cottage is small, but comfortable. Amazing views to the water through the Madrona trees. Truly, it was just right."
Studio with a View!!

Anacortes Condo ~ 1 Mi to Marina & Fidalgo Bay!

8.8 out of 10, Excellent, (6)
"Excellent"
Anacortes Condo ~ 1 Mi to Marina & Fidalgo Bay!

Apartment w/ Gas Fireplace ~ 1/2 Mi to Beach!

9.8 out of 10, Exceptional, (7)
"We came to help my elderly dad settle into a new situation. This apartment was a comfortable and much needed refuge at the end of each day. The space was well supplied with everything we needed. The location was great! "
Apartment w/ Gas Fireplace ~ 1/2 Mi to Beach!

Airy Home Near Anacortes w/ San Juan de Fuca Views

3.0 star property
Airy Home Near Anacortes w/ San Juan de Fuca Views

Anacortes Condo - Walk to Town, Marina, + Bay!

3.0 star property
10.0 out of 10, Exceptional, (1)
"Enjoyed the property. "
Anacortes Condo - Walk to Town, Marina, + Bay!
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in San Juan Island
Save an average of 15% on thousands of hotels when you're signed in

Other property types in San Juan Island

Secluded 4BR Retreat | Wellness, Hot Tub & Pet Friendly

10.0 out of 10, Exceptional, (21)
"Our construction crew stayed at the house while working on a street project. They enjoyed the hot tub, board games and all the other stuff available. Plenty of hot water, towels and blankets! Enough room for everyone to have their own space."
Secluded 4BR Retreat | Wellness, Hot Tub & Pet Friendly

Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Stunning View!

9.6 out of 10, Exceptional, (195)
"We love this house on San Juan Island. This was our second time staying at the house and the kids are begging to go back. The house is comfortable and has a great table for family dinners, board games and puzzles. The beach and property are just fantastic. The lack of internet is a small ding in my mind though it is helpful to get the kids off screens. Jenny was very responsive and helpful when we had an issue. Strongly recommend for some quiet downtime."
Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Stunning View!

Utter Seclusion on 600 Feet of Waterfront , Free WiFi

9.8 out of 10, Exceptional, (178)
"The place was nice and clean. It felt very secluded but was only 10 min from town!"
Utter Seclusion on 600 Feet of Waterfront , Free WiFi
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.