Photo by Bob Kirschke

Find hotels in Harbor Island, San Diego from ¥8,271

  • Plan, book, stay with confidence

  • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Check prices for these dates

Next weekend
In two weeks

Filter by

Guest rating
Guest rating
Star rating

Discover 8,147 Harbor Island hotels and places to stay, with room rates, reviews, and availability. Most hotels are fully refundable.

Sheraton San Diego Resort

4.0 star property
8.2 out of 10, Very Good, (2603)
"Great views and restaurants "
The price is ¥22,607
¥31,244 total
includes taxes & fees
Apr 20 - Apr 21
Sheraton San Diego Resort

Hilton San Diego Airport/Harbor Island

3.5 star property
8.8 out of 10, Excellent, (1147)
"El Trato en el restaurante muy rufo el mesero"
The price is ¥21,515
¥24,730 total
includes taxes & fees
May 12 - May 13
Hilton San Diego Airport/Harbor Island

Best Western Yacht Harbor Hotel

2.5 star property
8.6 out of 10, Excellent, (1532)
"The grounds were well kept for taking pictures."
The price is ¥17,532
¥19,724 total
includes taxes & fees
Apr 28 - Apr 29
Best Western Yacht Harbor Hotel

Humphreys Half Moon Inn

3.5 star property
9.2 out of 10, Wonderful, (2268)
"It is a beautiful hotel with everything it offers makes it even more great"
The price is ¥21,632
¥27,223 total
includes taxes & fees
Apr 20 - Apr 21
Humphreys Half Moon Inn

Bay Club Hotel & Marina

3.5 star property
9.0 out of 10, Wonderful, (2570)
"The view from my room was absolutely incredible overlooking the San Diego sky line and the bay. Very quiet. Lovely area!"
The price is ¥22,265
¥25,593 total
includes taxes & fees
May 11 - May 12
Bay Club Hotel & Marina

Sea Harbor Hotel

2.0 star property
8.6 out of 10, Excellent, (813)
"Very nice hotel, Dougie aka Bam Bam was accommodating and super cool. The hotel is safe, clean and has video surveillance which we felt very safe. We will definitely be staying there again. "
The price is ¥17,062
¥18,853 total
includes taxes & fees
Apr 20 - Apr 21
Sea Harbor Hotel

Best Western Plus Island Palms Hotel & Marina

3.0 star property
8.8 out of 10, Excellent, (1538)
"We stayed for night, no issues to report. I wasn’t a fan of the single coffee maker in the lobby. There was a line to get a cup of coffee."
The price is ¥19,936
¥22,916 total
includes taxes & fees
May 11 - May 12
Best Western Plus Island Palms Hotel & Marina

Americas Best Value Inn Loma Lodge

2.0 star property
7.0 out of 10, Good, (1012)
"Great value, most bang for the buck! I love the table with mirror and comfortable chair, as I needed to work on my laptop. "
The price is ¥9,596
¥10,603 total
includes taxes & fees
Apr 21 - Apr 22
Americas Best Value Inn Loma Lodge

Old Town Western Inn & Suites

2.5 star property
7.2 out of 10, Good, (1014)
"I stayed here to have access to the San Diego Trolley more than anything else, and while the on-site ammenities are somewhat limited, the location, value and condition make it a great place to stay. The room was very clean and the bed very comfortable with great pillows. There is a small breakfast available to guests consisting of waffles, toast, muffins and juice, which is nice but a bit of fresh fruit would have made a big difference. Still, I enjoyed the easy access to both transit and the...
The price is ¥11,649
¥12,873 total
includes taxes & fees
Apr 22 - Apr 23
Old Town Western Inn & Suites

Wyndham San Diego Bayside

4.0 star property
8.2 out of 10, Very Good, (5670)
"Place was great !!"
The price is ¥21,633
¥24,378 total
includes taxes & fees
Apr 27 - Apr 28
Wyndham San Diego Bayside

Best Western Plus Hacienda Hotel Old Town

3.0 star property
8.4 out of 10, Very Good, (1589)
"After a 5 hour drive the bed seemed so comfortable. The room was clean. The locations was very ideal. Shops and restaurants were close by. Staying here made the trip so much nicer and had an amazing experience. "
The price is ¥19,194
¥21,631 total
includes taxes & fees
Apr 20 - Apr 21
Best Western Plus Hacienda Hotel Old Town

Comfort Inn Sea World Area

3.5 star property
8.4 out of 10, Very Good, (1972)
"Nice, clean hotel for a night or 2 stay, staff is friendly, free parking available, breakfast is OK, room was clean, near airport and liberty station. "
The price is ¥14,858
¥16,744 total
includes taxes & fees
Apr 21 - Apr 22
Comfort Inn Sea World Area

Wyndham Garden San Diego Near SeaWorld

3.0 star property
7.2 out of 10, Good, (3843)
"Arrived and checked in on Monday afternoon. The lady who’s helping me to check in was very friendly and professional. "
The price is ¥13,173
¥14,845 total
includes taxes & fees
Apr 22 - Apr 23
Wyndham Garden San Diego Near SeaWorld

La Pensione Hotel

3.0 star property
8.6 out of 10, Excellent, (1698)
"Location was great; room was small but comfortable and quiet. Front staff was friendly and helpful. We liked that the housekeeping policy (no room cleaning except a "refresh" if requested) was clearly indicated, so we knew what to expect. Personally, we really like to have breakfast included at the hotel, so not having that was a minus for us, even though we were surrounded by restaurants."
The price is ¥24,028
¥26,597 total
includes taxes & fees
Apr 20 - Apr 21
La Pensione Hotel

Hotel Zindel

2.0 star property
7.6 out of 10, Good, (430)
"The late 4 pm checkin and early 10am checkout is probably my only complaint. Beyond that, the property was great. Comfortable outside seating to relax. Room was similar to any hotel setup with a bit more kitchen available. The price was about 30-40 cheaper than the same surrounding traditional hotels. The location was perfect right by little Italy. Was bustling at night when I came back from the baseball game. Airport close and traffic but room did okay to muffle noise and offered ear...
The price is ¥8,271
¥12,694 total
includes taxes & fees
Apr 22 - Apr 23
Hotel Zindel

Urban Boutique Hotel

3.0 star property
8.6 out of 10, Excellent, (1150)
"Great location. "
The price is ¥17,787
¥19,655 total
includes taxes & fees
Apr 20 - Apr 21
Urban Boutique Hotel

Heritage Inn San Diego

2.0 star property
6.6 out of 10, (1011)
"The rooms are decent just hot. It has a swamp cooler but it didn't feel like it was doing anything. The TV was a good size but the volume was messed up. I had it at 60 and it sounded like it was on 10. If it's just a room for sleep is good enough for the price. "
The price is ¥10,236
¥11,766 total
includes taxes & fees
May 7 - May 8
Heritage Inn San Diego

E-Z 8 Motel Old Town

2.5 star property
6.2 out of 10, (2038)
"For a low-rate hotel, I had a great stay. They don't provide amenities so you need to bring your own bathroom items. The facilities are outdated but my room was clean. They have an outside pool I saw a family use it on the weekend but otherwise was empty the whole time. I never used the pool. They have a laundromat but I'm unsure if it's safe to use as there are many homeless who live on the street and the laundromat door was stayed open. I'm not sure if my laundry would be safe to leave...
The price is ¥11,118
¥12,528 total
includes taxes & fees
Apr 20 - Apr 21
E-Z 8 Motel Old Town

The Little Italy Hotel Downtown San Diego

4.0 star property
7.8 out of 10, Good, (1005)
"The staff"
The price is ¥15,867
¥17,882 total
includes taxes & fees
Apr 20 - Apr 21
The Little Italy Hotel Downtown San Diego

Manchester Grand Hyatt San Diego

4.0 star property
9.0 out of 10, Wonderful, (2766)
"The property is gorgeous and beautifully located. Top notch service and amenities. Would definitely stay here again!"
The price is ¥25,450
¥35,441 total
includes taxes & fees
Apr 20 - Apr 21
Manchester Grand Hyatt San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in Harbor Island
Save an average of 15% on thousands of hotels when you're signed in

Frequently asked questions

What's it like in Harbor Island?

Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best hotel for a stay in Harbor Island?

Based on Expedia customer reviews, Hilton San Diego Airport/Harbor Island is the highest ranked property in Harbor Island. This hotel is a short 5-minute walk from Naval Base Coronado, and it offers a restaurant and an outdoor pool.

How many hotels will I find in Harbor Island?

Book one of Expedia's 7 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.

Where can I learn more about changing or cancelling my trip to Harbor Island?

For more information about rescheduling or cancelling your trip to Harbor Island, head over to our customer service page.

What is there to do around this San Diego neighborhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Marine Corps Recruit Depot or Port of San Diego.